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Kepler Integration with Clotho: Development Plan

Here we will keep high level information on the development of this project. This work is ongoing and the best place for the latest information is http://sourceforge.net/projects/keplerclotho

Documents

  • For the latest documentation and "roadmap" see - http://2009.igem.org/Team:Berkeley_Software

Participants

  • Lead: Douglas Densmore (UC Berkeley/Joint BioEnergy Institute)
  • Thien Nguyen (UC Berkeley)
  • Nina Revko (UC Berkeley)

Work in Progress

Blue TriangleWe are developing code to assemble workflows in Kepler which speak to Clotho via Java's Remote Method Invocation (RMI) API. There is a new Clotho tool for connecting to other programs via RMI. We have developed a Kepler actor which also communicates via RMI. Together Kepler can receive information from Clotho related to the physical assembly requirements for a composite device (a collection of individual DNA parts). A set of actors has now been created which will generate files for liquid handling robots from this assembly information to make the actual creation of the device a reality. We have also created a workflow which will generate spreadsheet information for the design of oligonucleotide sequences as well.

Technical Documentation

Green TriangleClotho Tool - http://www.clothocad.org

Clotho/Kepler Integration - http://sourceforge.net/projects/keplerclotho/

2009 iGEM page - http://2009.igem.org/Team:Berkeley_Software

Archive

 Red TriangleNo archived material at this time. Again, we recommend you check out the provided links in the technical documentation section.

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