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Kepler Publications

  • Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis. Barseghian, Derik and Altintas, Ilkay and Jones, Matthew B. and Crawl, Daniel and Potter, Nathan and Gallagher, James and Cornillon, Peter and Schildhauer, Mark and Borer, Elizabeth T. and Seabloom, Eric W. and Hosseini, Parviez R. (2010) Ecological Informatics. Volume 5. Pages: 42 - 50. (Download)
  • Efficient provenance storage over nested data collections. Anand, Manish Kumar and Bowers, Shawn and McPhillips, Timothy and Lud\"ascher, Bertram (2009) . Pages: 958--969. (Download)
  • Exploring Scientific Workflow Provenance Using Hybrid Queries over Nested Data and Lineage Graphs. Anand, Manish and Bowers, Shawn and McPhillips, Timothy and Ludäscher, Bertram (2009) Scientific and Statistical Database Management. Pages: 237--254. (Download)
  • Kepler + Hadoop: a general architecture facilitating data-intensive applications in scientific workflow systems.. Wang, Jianwu and Crawl, Daniel and Altintas, Ilkay (2009) . (Download)
  • Scientific Process Automation and Workflow Management. Lud\"ascher, Bertram and Altintas, Ilkay and Bowers, Shawn and Cummings, Julian and Critchlow, Terence and Deelman, Ewa and Roure, David De and Freire, Juliana and Goble, Carole and Jones, Matthew and Klasky, Scott and McPhillips, Timothy and Podhorszki, Norbert and Silva, Claudio and Taylor, Ian and Vouk, Mladen (2009) . (Download)
  • Scientific Workflows: Business as Usual?. Lud\"ascher, Bertram and Weske, Mathias and McPhillips, Timothy and Bowers, Shawn (2009) . (Download)
  • Scientific workflow design for mere mortals. McPhillips, Timothy and Bowers, Shawn and Zinn, Daniel and Lud\"ascher, Bertram (2009) Future Gener. Comput. Syst.. Volume 25. Pages: 541--551. (Download)
  • A Provenance-Based Fault Tolerance Mechanism for Scientific Workflows. Crawl, Daniel and Altintas, Ilkay (2008) Provenance and Annotation of Data and Processes. Pages: 152--159. (Download)
  • Flexible Scientific Workflow Modeling Using Frames, Templates, and Dynamic Embedding. Ngu, Anne and Bowers, Shawn and Haasch, Nicholas and McPhillips, Timothy and Critchlow, Terence (2008) Scientific and Statistical Database Management. Pages: 566--572. (Download)
  • From computation models to models of provenance: the RWS approach.. Ludäscher, Bertram and Podhorszki, Norbert and Altintas, Ilkay and Bowers, Shawn and McPhillips, Timothy M. (2008) Concurrency and Computation: Practice and Experience. Volume 20. Pages: 507-518. (Download)
  • Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life. Bowers, Shawn and McPhillips, Timothy and Riddle, Sean and Anand, Manish and Ludäscher, Bertram (2008) Provenance and Annotation of Data and Processes. Pages: 70--77. (Download)
  • Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life.. Bowers, Shawn and McPhillips, Timothy M. and Riddle, Sean and Anand, Manish Kumar and Ludäscher, Bertram (2008) . Volume 5272. Pages: 70-77. (Download)
  • Nimrod/K: towards massively parallel dynamic grid workflows. Abramson, David and Enticott, Colin and Altinas, Ilkay (2008) . Pages: 1--11. (Download)
  • Provenance in collection-oriented scientific workflows. Bowers, Shawn and McPhillips, Timothy M. and Ludäscher, Bertram (2008) Concurrency and Computation: Practice and Experience. Volume 20. Pages: 519-529. (Download)
  • Report on the Principles of Provenance Workshop. Cheney, James and Buneman, Peter and Lud\"ascher, Bertram (2008) SIGMOD Rec.. Volume 37. Pages: 62--65. (Download)
  • Scientific Workflows. Ludäscher, B. and Bowers, S. and McPhillips, T. (2008) .
  • Scientific workflow design for mere mortals. McPhillips, Timothy and Bowers, Shawn and Zinn, Daniel and Ludaescher, Bertram (2008) Future Generation Computer Systems. Volume 25. Pages: 541-551. (Download)
  • Special Issue: The First Provenance Challenge.. Moreau, Luc and Ludäscher, Bertram and Altintas, Ilkay and Barga, Roger S. and Bowers, Shawn and Callahan, Steven P. and Jr., George Chin and Clifford, Ben and Cohen, Shirley and Boulakia, Sarah Cohen and Davidson, Susan B. and Deelman, Ewa and Digiampietri, Luciano A. and Foster, Ian T. and Freire, Juliana and Frew, James and Futrelle, Joe and Gibson, Tara and Gil, Yolanda and Goble, Carole A. and Golbeck, Jennifer and Groth, Paul T. and Holland, David A. and Jiang, Sheng and Kim, Jihie and Koop, David and Krenek, Ales and McPhillips, Timothy M. and Mehta, Gaurang and Miles, Simon and Metzger, Dominic and Munroe, Steve and Myers, Jim and Plale, Beth and Podhorszki, Norbert and Ratnakar, Varun and Santos, Emanuele and Scheidegger, Carlos Eduardo and Schuchardt, Karen and Seltzer, Margo I. and Simmhan, Yogesh L. and Silva, Cláudio T. and Slaughter, Peter and Stephan, Eric G. and Stevens, Robert and Turi, Daniele and Vo, Huy T. and Wilde, Michael and Zhao, Jun and Zhao, Yong (2008) Concurrency and Computation: Practice and Experience. Volume 20. Pages: 409-418. (Download)
  • A knowledge environment for the biodiversity and ecological sciences. Michener, William K and Beach, James H and Jones, Matthew B and Ludaescher, Bertram and Pennington, Deana D and Pereira, Ricardo S and Rajasekar, Arcot and Schildhauer, Mark (2007) JOURNAL OF INTELLIGENT INFORMATION SYSTEMS. Volume 29. Pages: 111--126.
  • Project histories: Managing data provenance across collection-oriented scientific workflow runs. Bowers, S and McPhillips, T and Wu, M and Lud\"ascher, B (2007) . Volume 4544. Pages: 122--138.
  • Provenance in Scientific Workflow Systems.. Davidson, Susan B. and Boulakia, Sarah Cohen and Eyal, Anat and Ludäscher, Bertram and McPhillips, Timothy M. and Bowers, Shawn and Anand, Manish Kumar and Freire, Juliana (2007) IEEE Data Eng. Bull.. Volume 30. Pages: 44-50. (Download)
  • Workflow automation for processing plasma fusion simulation data. Podhorszki, Norbert and Ludaescher, Bertram and Klasky, Scott A. (2007) . Pages: 35--44. (Download)
  • A Calculus for Propagating Semantic Annotations Through Scientific Workflow Queries. Bowers, Shawn and Lud\"ascher, Bertram (2006) . Pages: 712-723.
  • A model for user-oriented data provenance in pipelined scientific workflows. Bowers, S and McPhillips, T and Lud\"ascher, B and Cohen, S and Davidson, SB (2006) . Volume 4145. Pages: 133--147.
  • Collection-oriented scientific workflows for integrating and analyzing biological data. McPhillips, T and Bowers, S and Lud\"ascher, B (2006) . Volume 4075. Pages: 248--263. (Download)
  • Enabling scientific workflow reuse through structured composition of dataflow and control-flow. Bowers, S and Lud\"ascher, B and Ngu, AHH and Critchlow, T (2006) .
  • Provenance Collection Support in the Kepler Scientific Workflow System. Altintas, I. and Barney, O. and Jaeger-Frank, E. (2006) International Provenance and Annotation Workship (IPAW'06).
  • Scientific Workflows: More e-Science Mileage from Cyberinfrastructure. Lud\"ascher, Bertram and Bowers, Shawn and McPhillips, Timothy and Podhorszki, Norbert (2006) e-Science and Grid Computing, International Conference on. Volume 0. Pages: 145. (Download)
  • Scientific workflow management and the Kepler system. Lud\"ascher, Bertram and Altintas, Ilkay and Berkley, Chad and Higgins, Dan and Jaeger, Efrat and Jones, Matthew and Lee, Edward A. and Tao, Jing and Zhao, Yang (2006) Concurrency and Computation: Practice and Experience. Volume 18. Pages: 1039-1065.
  • The Center for Plasma Edge Simulation Workflow Requirements.. Klasky, Scott and Ludäscher, Bertram and Parashar, Manish (2006) . Pages: 73. (Download)
  • The new bioinformatics: Integrating ecological data from the gene to the biosphere. Jones, Matthew B and Schildhauer, Mark P and Reichman, O. J and Bowers, Shawn (2006) ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS. Volume 37. Pages: 519--544.
  • Actor-oriented design of scientific workflows. Bowers, S. and Ludascher, B. (2005) CONCEPTUAL MODELING - ER 2005. Volume 3716. Pages: 369--384.
  • An approach for pipelining nested collections in scientific workflows. McPhillips, T. M. and Bowers, S. (2005) SIGMOD RECORD. Volume 34. Pages: 12--17.
  • Data integration and workflow solutions for ecology. Michener, W. and Beach, J. and Bowers, S. and Downey, L. and Jones, M. and Ludascher, B. and Pennington, D. and Rajasekar, A. and Romanello, S. and Schildhauer, M. and Vieglais, D. and Zhang, J. T. (2005) DATA INTEGRATION IN THE LIFE SCIENCES, PROCEEDINGS. Volume 3615. Pages: 321--324.
  • Data procurement for enabling scientific workflows: On exploring inter-ant parasitism. Bowers, S. and Thau, D. and Williams, R. and Ludascher, B. (2005) SEMANTIC WEB AND DATABASES. Volume 3372. Pages: 57--63.
  • Incorporating semantics in scientific workflow authoring. Berkley, C. and Bowers, S. and Jones, M. and Lud\"ascher, B. and Schildhauer, M. and Tao, J. (2005) Proceedings of the 17th international conference on Scientific and statistical database management table of contents. Pages: 75--78.
  • Scientific Workflow Management and the Kepler System. Lud\"ascher, B. and Altintas, I. and Berkley, C. and Higgins, D. and Jaeger-Frank, E. and Jones, M. and Lee, E. and Tao, J. and Zhao, Y. (2005) Concurrency and Computation: Practice \& Experience.
  • Kepler: Towards a Grid-Enabled System for Scientific Workflows. Altintas, I. and Berkley, C. and Jaeger, E. and Jones, M. and Lud\"ascher, B. and Mock, S. (2004) the Workflow in Grid Systems Workshop in GGF10-The Tenth Global Grid Forum, Berlin, Germany, March.
  • Kepler: an extensible system for design and execution of scientific workflows. Altintas, I. and Berkley, C. and Jaeger, E. and Jones, M. and Ludascher, B. and Mock, S. (2004) Scientific and Statistical Database Management, 2004. Proceedings. 16th International Conference on. Pages: 423--424.